
#ptraj GAAC-ions.topo

trajin GAAC-strip.crd

#parm /uufs/chpc.utah.edu/common/home/u0181375/dirs/biodata8/cheatham/anton-abc/GAAC/avgpdb/avg_0-10us.pdb
reference parmindex 1 /uufs/chpc.utah.edu/common/home/u0181375/dirs/biodata8/cheatham/anton-abc/GAAC/avgpdb/avg_0-10us-ions.pdb
rms reference mass :1-36

strip :37-99999
strip @H=
strip @?H=

rmsavgcorr mass out rmscorr-fit.dat stop 200000
datafile time rmscorr-fit.dat 50
